January 27, 2021
Nature Communications

Integrating deep learning CT-scan model, biological and clinical variables to predict severity of COVID-19 patients

ML
Abstract

The SARS-COV-2 pandemic has put pressure on intensive care units, so that identifying predictors of disease severity is a priority. We collect 58 clinical and biological variables, and chest CT scan data, from 1003 coronavirus-infected patients from two French hospitals.

We train a deep learning model based on CT scans to predict severity. We then construct the multimodal AI-severity score that includes 5 clinical and biological variables (age, sex, oxygenation, urea, platelet) in addition to the deep learning model. We show that neural network analysis of CT-scans brings unique prognosis information, although it is correlated with other markers of severity (oxygenation, LDH, and CRP) explaining the measurable but limited 0.03 increase of AUC obtained when adding CT-scan information to clinical variables. Here, we show that when comparing AI-severity with 11 existing severity scores, we find significantly improved prognosis performance; AI-severity can therefore rapidly become a reference scoring approach.

Authors
Nathalie Lassau
Samy Ammari
Emile Chouzemoux
Hugo Gortais
Paul Hérent
Matthieu Devilder
Samer Soliman
Olivier Meyrignac
Marie-Pauline Talabard
Jean-Philippe Lamarque
Remy Dubois
Nicolas Loiseau
Paul Trichelair
Etienne Bendjebbar
Gabriel Garcia
Corinne Balleyguier
Mansouria Merad
Annabelle Stoclin
Simon Jegou
Franck Griscelli
Nicolas Tetelboum
Yingping Li
Sagar Verma
Matthieu Terris
Tassnim Dardouri
Kavya Gupta
Ana Neacsu
Frank Chemouni
Meriem Sefta, PhD
Paul Jehanno
Imad Bousaid
Yannick Boursin
Emmanuel Planchet
Mikael Azoulay
Jocelyn Dachary
Fabien Brulport
Adrian Gonzalez
Olivier Dehaene
Jean-Baptiste Schiratti
Kathryn Schutte
Jean-Christophe Pesquet
Hughes Talbot
Elodie Pronier
Gilles Wainrib
Thomas Clozel, MD
Fabrice Barlesi
Marie-France Bellin
Michael G.B. Blum